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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4968426_4968518_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4968426 - 4968518
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATTTTCAATA
Flanking Amino Acid:
VLATIGELAQVSGLEMRKWV
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.7
37.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72.9
0.52
0.9
70.2
35
Minor 5ss
34.4
-1.8
3.5
47.6
48.1
Minor BPS
56.7
0.21
1.5
63.42
37.6

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004