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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4969872_4970150_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4969872 - 4970150
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATGTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGGCATTTAAAG
Flanking Amino Acid:
KLLVVGITDPDPDIRFCVLA
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.4
0.75
0.8
77.5
36.5
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
48.4
-0.2
1.7
52.08
42

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004