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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4970768_4971561_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4970768 - 4971561
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTACCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGCATCTTACCT
Flanking Amino Acid:
LLEPMLAVGLSPALTAVLYD
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.6
0.64
0.8
74.9
34.4
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
58
0.33
1.7
72.79
44.1

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004