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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4975155_4975526_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4975155 - 4975526
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TCTCCACCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTCTCTCCACC
Flanking Amino Acid:
DRNEGRRHAAVLVLRELAIS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.1
71.3
40.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.3
0.59
0.8
66.6
34.5
Minor 5ss
38.8
-1.3
3.1
60.2
44.1
Minor BPS
48.8
-0.1
2
63.43
42.2

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004