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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4977173_4977547_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4977173 - 4977547
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
QHYVTMELREMSQEESTRFY
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
MTOR
Ensembl Gene ID:
ENSAPLG00000007266
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007683
4914729 - 4978732
64004