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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4979983_4981204_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4979983 - 4981204
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGATGCTTCATT
Flanking Amino Acid:
GLSSSFLYTGGIGFKYVALG
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
51.3
0.12
2.2
73.32
43.8

Associated Gene:

Gene:
UBIAD1
Ensembl Gene ID:
ENSAPLG00000008410
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008729
4979466 - 4981692
2227