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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_499607_502019_R

Intron Information:

Intron Rank:
153807
Intron Class:
major
Intron Phase:
Intron Coordinates:
499607 - 502019
Intron Length:
2413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGCCATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
72.8
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
46.7
-0.3
2.5
57.4
41.8
Minor BPS
58.8
0.35
1.6
70.72
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030245
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035434
499432 - 510422
10991