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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5099539_5101224_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5099539 - 5101224
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
CTAAGCCTAACA
Flanking Amino Acid:
GMGQDLADIQGSLELAMTHP
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
90.2
0.9
0.6
85.5
21.7
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
47.7
-0.1
2.1
61.78
43.9

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701