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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5101445_5103024_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5101445 - 5103024
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
CCCTTCGTATCT
Flanking Amino Acid:
YVAMLAKQSTSKVQVLYGGT
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
74.1
0.54
0.8
66.3
34.7
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
45.8
-0.2
2.2
62.15
48.3

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701