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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5104130_5104511_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5104130 - 5104511
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGATCCCAAACC
Flanking Amino Acid:
AAYAANIFSQIPAVHDFGLF
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.8
41.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79
0.65
0.9
74
35.7
Minor 5ss
51.1
0.04
2.4
67.9
43.4
Minor BPS
54.2
0.11
2
69.12
41.7

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701