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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5105562_5107070_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5105562 - 5107070
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTGCCTTTGATT
Flanking Amino Acid:
IPLLSVEEEPVSLEMGDVPL
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
35.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.9
0.76
0.7
76.9
31.7
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
62.2
0.46
1.3
71.69
40.2

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701