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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5107233_5107645_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5107233 - 5107645
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
ATACACTTACCA
Flanking Amino Acid:
SAVKSRWVIVGLFLVVLLLS
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
68.8
43.8
Major BPS
61.4
0.28
1
53
33.7
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
38.3
-1.3
2.8
40.5
45.5
Minor BPS
52.9
0.09
1.8
65.63
40

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701