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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5109960_5110400_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5109960 - 5110400
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACCCTC
5'SS Class:
weak_major
3'SS Sequence:
CTTTGTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CTGTAATGAACT
Flanking Amino Acid:
YVAAKEQQRTRKLYFAQSHK
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
58.4
46.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
76.2
0.59
0.9
71.5
38.3
Minor 5ss
48.5
-0.1
2.9
69.3
41.4
Minor BPS
49.7
0.06
2
71.29
44.9

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701