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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5111909_5112894_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5111909 - 5112894
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TCGTCCTCCATC
Flanking Amino Acid:
KPGGAQCLPSGYSISSFLQM
Intron Amino Acid Position:
1023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
61.5
43.2
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
88.6
0.87
0.7
81.1
30.9
Minor 5ss
38.3
-1.3
3.1
45.9
44.6
Minor BPS
49.7
-0
2
61.97
44.1

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701