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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5113521_5113922_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5113521 - 5113922
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTGTTTCCAACT
Flanking Amino Acid:
HWKQIFMEIIGVQSALYGLI
Intron Amino Acid Position:
1125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
87.7
28.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
88.5
0.87
0.7
80.8
36.8
Minor 5ss
22.7
-3.1
3.9
33.8
42.3
Minor BPS
53.1
0.17
1.9
76.27
40.6

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701