About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5114037_5115030_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5114037 - 5115030
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCACGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CGTCCTTTAAAC
Flanking Amino Acid:
LLLPVLLSILGVVCLVVTIM
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.7
0.78
0.8
81.7
29.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
61.7
0.35
1.4
65.89
39.4

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701