About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5115198_5115948_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5115198 - 5115948
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
AATCCCTTAACA
Flanking Amino Acid:
GENLPLHHTEDPTACRQWRT
Intron Amino Acid Position:
1219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
78.3
0.64
0.9
72.8
37.5
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
80.2
0.95
1.1
81.23
33

Associated Gene:

Gene:
DISP3
Ensembl Gene ID:
ENSAPLG00000008411
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008792
5098611 - 5116311
17701