Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5172492_5172896_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5172492 - 5172896

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

GTCTCCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTCAC

U12 Branch Point Sequence:

TTCACAGAGACA

Flanking Amino Acid:

TTQPKIVVKDWYAGRSDAGC

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

77.9

36.8

Major BPS

66.1

0.4

1.1

69.1

37.9

Major PPT

79.9

0.67

0.8

73.2

31.7

Minor 5ss

36.2

-1.6

2.7

42.7

38.4

Minor BPS

40.1

-0.7

2.4

56.01

43.1

Associated Gene:

Gene:

FBXO2

Ensembl Gene ID:

ENSAPLG00000008803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009169

5171808 - 5175640

3833