About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5176905_5177615_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5176905 - 5177615
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
EVHKYFVTSYGPCFKSQLIT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
78.1
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.1
0.77
0.8
78.4
34
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009563
5175889 - 5179039
3151