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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5178183_5178892_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5178183 - 5178892
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
TCTTTTTCTACA
Flanking Amino Acid:
EQWSDATWREMSHTFNNYPA
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
92
0.95
0.6
87.6
22.8
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
50.9
0.02
1.8
66.46
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009183
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009563
5175889 - 5179039
3151