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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5180794_5180962_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5180794 - 5180962
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCCAT
U12 Branch Point Sequence:
TCAGACAGAACT
Flanking Amino Acid:
LKTMTSDILKMQLYVEERAH
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
64.5
0.36
1.2
72.7
34.4
Major PPT
85.3
0.79
0.7
77.4
31.4
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
45.4
-0.2
2
63.95
45.5

Associated Gene:

Gene:
MAD2L2
Ensembl Gene ID:
ENSAPLG00000009488
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009907
5180752 - 5184243
3492