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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5182504_5183330_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5182504 - 5183330
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTTCTAACC
Flanking Amino Acid:
LHCVKPLLEKNDVEKVVVVI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.9
0.9
0.7
85.1
29.6
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
63.2
0.39
1.7
74.1
37

Associated Gene:

Gene:
MAD2L2
Ensembl Gene ID:
ENSAPLG00000009488
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009907
5180752 - 5184243
3492