About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5183403_5183855_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5183403 - 5183855
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GACTCCTCACTC
Flanking Amino Acid:
KRKKYNVPVQMSCHPELNQY
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.3
0.64
0.9
72.3
37.9
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
48.6
-0.1
1.8
56.46
42.2

Associated Gene:

Gene:
MAD2L2
Ensembl Gene ID:
ENSAPLG00000009488
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009907
5180752 - 5184243
3492