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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5194938_5195466_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5194938 - 5195466
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
GTGTAATCCACT
Flanking Amino Acid:
VLPATSPRSQARLRQDGDVM
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
79.3
0.66
1
72.9
42.2
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
42.4
-0.5
2.3
63.52
45.9

Associated Gene:

Gene:
DRAXIN
Ensembl Gene ID:
ENSAPLG00000009594
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009994
5192832 - 5198490
5659