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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5196044_5196275_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5196044 - 5196275
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCCCGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTATCCTGACCT
Flanking Amino Acid:
PCDHHLDCLPGSCCDLREHL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
74.3
0.55
0.9
67.8
37.6
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
60.6
0.41
1.8
77.76
44.2

Associated Gene:

Gene:
DRAXIN
Ensembl Gene ID:
ENSAPLG00000009594
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009994
5192832 - 5198490
5659