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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5196366_5198377_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5196366 - 5198377
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTTCCTACAG
Flanking Amino Acid:
KCYDDCMCTEGLRCYAKFHR
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
93.2
0.97
0.6
88.6
21.1
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
49
-0.2
2.1
64.91
42.8

Associated Gene:

Gene:
DRAXIN
Ensembl Gene ID:
ENSAPLG00000009594
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009994
5192832 - 5198490
5659