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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5210375_5210565_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5210375 - 5210565
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TATTGTGAATTT
Flanking Amino Acid:
IILVHWLLTVWGSMNYLFPA
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
79
0.65
1
76.3
37.7
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
37.7
-0.8
2.5
59.84
44.7

Associated Gene:

Gene:
AGTRAP
Ensembl Gene ID:
ENSAPLG00000009616
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010022
5210313 - 5213732
3420