About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5210678_5211285_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5210678 - 5211285
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
TTCAGCTTATGT
Flanking Amino Acid:
QRDSLDAIMMFLTGLLLTVL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
84.8
0.78
0.7
77.7
31.1
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
46.2
-0.2
2.3
68.05
48.5

Associated Gene:

Gene:
AGTRAP
Ensembl Gene ID:
ENSAPLG00000009616
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010022
5210313 - 5213732
3420