About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5211485_5213640_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5211485 - 5213640
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTCATCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TTTCTGTTCAGG
Flanking Amino Acid:
ERGGEYTFNIGQDRSTYEPI
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
71.2
0.48
1
65.2
36.1
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
41.8
-0.7
2.6
55.65
45.9

Associated Gene:

Gene:
AGTRAP
Ensembl Gene ID:
ENSAPLG00000009616
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010022
5210313 - 5213732
3420