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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5238707_5238993_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5238707 - 5238993
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAATCTTTCATC
Flanking Amino Acid:
QEWDDFPNGRWGNSSSPAFG
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.8
0.67
0.9
72.4
37.8
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
59.3
0.28
1.7
68.05
37.8

Associated Gene:

Gene:
MTHFR
Ensembl Gene ID:
ENSAPLG00000009771
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010203
5235413 - 5242712
7300