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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5240715_5240896_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5240715 - 5240896
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CCCTCTTCCAAA
Flanking Amino Acid:
FDDYFDICVAGYPKGHPEAE
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
80.3
32.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
65.1
0.34
1
65.7
27.6
Minor 5ss
45.7
-0.4
2.6
62.6
42.2
Minor BPS
42.5
-0.6
2
47.74
43

Associated Gene:

Gene:
MTHFR
Ensembl Gene ID:
ENSAPLG00000009771
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010203
5235413 - 5242712
7300