About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5241008_5241130_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5241008 - 5241130
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CTGGGTTTATTT
Flanking Amino Acid:
GLKNIMALRGDPAGEEWEEE
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
73.8
36.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
30.8
-2.2
3
42.1
44.5
Minor BPS
44.2
-0.3
2
58.25
46.1

Associated Gene:

Gene:
MTHFR
Ensembl Gene ID:
ENSAPLG00000009771
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010203
5235413 - 5242712
7300