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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5241370_5242470_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5241370 - 5242470
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTAAAATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
CACCTCTAAAAT
Flanking Amino Acid:
TANAAVNLISRFDRMGAGGP
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
73
0.57
1
73.6
28.6
Major PPT
62.6
0.28
1
54.2
39.9
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
47.1
-0.1
1.8
59.08
44

Associated Gene:

Gene:
MTHFR
Ensembl Gene ID:
ENSAPLG00000009771
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010203
5235413 - 5242712
7300