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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5245248_5245820_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5245248 - 5245820
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGCCG
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATTC
Flanking Amino Acid:
ERESRTPEELTILGETHEEE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
50.8
45.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.3
0.68
0.8
76.5
32.1
Minor 5ss
30.1
-2.3
3.4
36.2
42.8
Minor BPS
53.3
0.08
1.8
66.91
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028369
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032098
5245164 - 5251017
5854