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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5245881_5246936_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5245881 - 5246936
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAAGT
5'SS Class:
major
3'SS Sequence:
GGCATTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTGACC
Flanking Amino Acid:
DEILPRKDYESLDYDRCIND
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
71.5
40.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.9
0.49
1
61.6
44.4
Minor 5ss
28.4
-2.5
3.2
39.9
45.7
Minor BPS
70.3
0.62
1.6
79.19
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028369
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032098
5245164 - 5251017
5854