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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5254734_5254864_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5254734 - 5254864
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
TTTGGATTAGCA
Flanking Amino Acid:
YGLPIMITLMVAKWTGDFFN
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
47.4
-0.2
2.3
68.36
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010122
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010580
5253939 - 5258106
4168