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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5254972_5255263_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5254972 - 5255263
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TATGTTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CAATCTTGGATT
Flanking Amino Acid:
LEWETEVEMDKLRASDIMEP
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
67.1
44
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.6
0.67
0.8
77.5
36.5
Minor 5ss
36.1
-1.6
3.5
47.8
42.2
Minor BPS
52.5
0.16
1.5
64.81
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010122
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010580
5253939 - 5258106
4168