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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5270397_5270663_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5270397 - 5270663
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTAACATTTATT
Flanking Amino Acid:
IGSLSGMGCNGSRKN*
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77.2
0.61
1
69.6
41.6
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
48.6
-0
1.9
67.88
42.6

Associated Gene:

Gene:
NPPB
Ensembl Gene ID:
ENSAPLG00000010661
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011091
5270380 - 5272477
2098