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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5270950_5272357_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5270950 - 5272357
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTTTCATGAAAC
Flanking Amino Acid:
SPAKELASMEALLERLEDKF
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
81.2
32.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
29.5
-2.4
3.1
40.4
45.5
Minor BPS
56.5
0.18
1.8
71.4
38.6

Associated Gene:

Gene:
NPPB
Ensembl Gene ID:
ENSAPLG00000010661
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011091
5270380 - 5272477
2098