About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5301813_5302605_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5301813 - 5302605
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTCTGAATCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTGTTCTGAATC
Flanking Amino Acid:
TASRMESTSLPQKIHISSAT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
39.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.8
0.4
0.9
59.4
40.8
Minor 5ss
33.9
-1.8
3.2
39
39.9
Minor BPS
61.5
0.34
1.5
66.3
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010669
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011103
5301622 - 5305918
4297