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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5303348_5305851_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5303348 - 5305851
Intron Length:
2504

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCTGGTCCC
5'SS Class:
major
3'SS Sequence:
TTCATTTTGAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATTCTGATTT
Flanking Amino Acid:
SLSCRKKGTVEKLSVETIGD
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
62.9
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67
0.38
1.2
70.2
39.3
Minor 5ss
20.3
-3.4
3.6
25.9
28.9
Minor BPS
58.2
0.33
1.7
77.32
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010669
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011103
5301622 - 5305918
4297