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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5310494_5311528_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5310494 - 5311528
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
AACTGCATAACT
Flanking Amino Acid:
NWVLTAAHCISSTLQYRVLL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
86.9
0.83
0.8
80.8
36.8
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
53
0.17
2.1
72.63
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010750
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027013
5308353 - 5315414
7062
ENSAPLT00000024232
5308353 - 5313591
5239
ENSAPLT00000011242
5306508 - 5317016
10509