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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5312282_5313533_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
5312282 - 5313533
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATCCCCT
5'SS Class:
weak_minor
3'SS Sequence:
GTATGTCTTCTAG|C
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TACTTATAAATC
Flanking Amino Acid:
RDLLRSPVPSTLGCGVPAYA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.5
-0
1.2
45.3
42.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71.7
0.49
0.9
62.7
44
Minor 5ss
64
0.47
2.3
76.2
33.5
Minor BPS
48.5
-0.1
1.9
59.79
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010750
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024232
5308353 - 5313591
5239