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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5312282_5316976_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5312282 - 5316976
Intron Length:
4695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTTAAAAC
5'SS Class:
weak_major
3'SS Sequence:
GTATGTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TACTTATAAATC
Flanking Amino Acid:
EMLKLLNTTPSLGCGVPAYA
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.2
55.2
35.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71.7
0.49
0.9
62.7
44
Minor 5ss
38
-1.4
2.9
48.9
40.5
Minor BPS
48.5
-0.1
1.9
59.79
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010750
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011242
5306508 - 5317016
10509