Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5326346_5330760_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5326346 - 5330760

Intron Length:

4415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGACT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTGTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATCAT

U12 Branch Point Sequence:

AGTTGATCATGT

Flanking Amino Acid:

VEGGSASKQEENLLVLTVAT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.8

0.98

0.8

85.2

31.7

Major BPS

0.57

1.2

41.2

Major PPT

77.1

0.61

0.8

72.1

32.5

Minor 5ss

34.9

-1.7

3.2

49.5

46.5

Minor BPS

37.3

-0.8

2.3

56.64

45.3

Associated Gene:

Gene:

PLOD1

Ensembl Gene ID:

ENSAPLG00000011324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011890

5326264 - 5342283

16020