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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5330853_5331362_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5330853 - 5331362
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGACT
5'SS Class:
major
3'SS Sequence:
TGTCATCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGTTCAGTAGAC
Flanking Amino Acid:
SAQFFNYKVQVLGLDEEWKG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
35.9
Major BPS
68
0.45
1
57.8
39
Major PPT
76.9
0.6
0.8
74
36.4
Minor 5ss
29.5
-2.3
3.1
41
45
Minor BPS
43.6
-0.5
2.4
61.99
42.7

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020