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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5331500_5332729_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5331500 - 5332729
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTGTCTTTTACT
Flanking Amino Acid:
DADLIILFIESYDVLFASGP
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
81.5
0.71
0.8
74.7
34.9
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
73.5
0.82
1.6
87.77
37.8

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020