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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5335103_5335876_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5335103 - 5335876
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CCTCTGATAACT
Flanking Amino Acid:
RIFQNLNGALDEVVLKFENA
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.8
0.65
1
69.7
45.4
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
45.6
-0.2
2.3
65.42
45.2

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020