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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5335975_5336337_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5335975 - 5336337
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
TTCCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGCCCTATAATG
Flanking Amino Acid:
VVIHGNGPTKLQLNYLGNYI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.2
41.7
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
88.2
0.86
0.7
83.7
24.4
Minor 5ss
29.2
-2.4
3.4
38.5
46.6
Minor BPS
49.4
-0.1
1.7
54.32
41.1

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020