About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5336440_5336540_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5336440 - 5336540
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTGAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTGAAT
Flanking Amino Acid:
EGLRSLTGIKDEALPMILIG
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
64.9
0.34
1
59.6
40.5
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
62.9
0.49
1.8
81.75
39.5

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020